Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs78898076 | chr17:12902795 | G/C | 0.000141 | 178 | 16.08 | 15 | 7.87 | KM Plot |
| PAAD | rs78903489 | chr1:227485912 | A/G | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs78928651 | chr11:125609973 | C/A | 0.0001 | 178 | 15.95 | 12.2 | 4.1 | KM Plot |
| PAAD | rs78944317 | chr1:227307861 | A/T | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs78991655 | chr18:24172901 | G/T | 2.94E-6 | 172 | 15.37 | 17.5 | 3.43 | KM Plot |
| PAAD | rs79006115 | chr6:27080507 | C/T | 1.36E-9 | 177 | 15.3 | 18.73 | 2.2 | KM Plot |
| PAAD | rs79014060 | chr1:227509081 | T/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs79025417 | chr1:227579428 | G/A | 6.96E-5 | 176 | 15.4 | 16.45 | 3.9 | KM Plot |
| PAAD | rs79084700 | chr1:227390836 | A/G | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs79098346 | chr1:227220437 | G/A | 4.08E-5 | 176 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs79100192 | chr11:68504972 | C/T | 1.31E-9 | 176 | 15.55 | 14.37 | 2.2 | KM Plot |
| PAAD | rs79127809 | chr8:81516337 | A/G | 8.31E-5 | 174 | 15.43 | 15.1 | 3.9 | KM Plot |
| PAAD | rs79146151 | chr1:227539055 | G/A | 1.03E-5 | 175 | 15.55 | 15.65 | 3.9 | KM Plot |
| PAAD | rs79217266 | chr7:20656305 | T/C | 1.81E-6 | 178 | 15.53 | 15.57 | 3.67 | KM Plot |
| PAAD | rs79235719 | chr1:227510167 | A/G | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |